CDS

Accession Number TCMCG017C25432
gbkey CDS
Protein Id OMO71964.1
Location join(39823..39963,40086..40149,40328..40386,40485..40560,40677..40836,40926..41172,41251..41366,41729..41760,41848..41909,42386..42488,42596..42704,42794..42891,43714..45488)
GeneID InterPro:IPR001360
Organism Corchorus olitorius
locus_tag COLO4_27904

Protein

Length 1013aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA215141, BioSample:SAMN03160584
db_source AWUE01019713.1
Definition Glycoside hydrolase, family 1 [Corchorus olitorius]
Locus_tag COLO4_27904

EGGNOG-MAPPER Annotation

COG_category A
Description Nucleoporin
KEGG_TC 1.I.1
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko03019        [VIEW IN KEGG]
KEGG_ko ko:K18723        [VIEW IN KEGG]
EC -
KEGG_Pathway -
GOs GO:0000003        [VIEW IN EMBL-EBI]
GO:0000822        [VIEW IN EMBL-EBI]
GO:0003006        [VIEW IN EMBL-EBI]
GO:0003341        [VIEW IN EMBL-EBI]
GO:0003351        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005515        [VIEW IN EMBL-EBI]
GO:0005543        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005635        [VIEW IN EMBL-EBI]
GO:0005643        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0006403        [VIEW IN EMBL-EBI]
GO:0006405        [VIEW IN EMBL-EBI]
GO:0006406        [VIEW IN EMBL-EBI]
GO:0006417        [VIEW IN EMBL-EBI]
GO:0006446        [VIEW IN EMBL-EBI]
GO:0006449        [VIEW IN EMBL-EBI]
GO:0006611        [VIEW IN EMBL-EBI]
GO:0006810        [VIEW IN EMBL-EBI]
GO:0006886        [VIEW IN EMBL-EBI]
GO:0006913        [VIEW IN EMBL-EBI]
GO:0006928        [VIEW IN EMBL-EBI]
GO:0007017        [VIEW IN EMBL-EBI]
GO:0007018        [VIEW IN EMBL-EBI]
GO:0007275        [VIEW IN EMBL-EBI]
GO:0007368        [VIEW IN EMBL-EBI]
GO:0007389        [VIEW IN EMBL-EBI]
GO:0007399        [VIEW IN EMBL-EBI]
GO:0007422        [VIEW IN EMBL-EBI]
GO:0008104        [VIEW IN EMBL-EBI]
GO:0008144        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008283        [VIEW IN EMBL-EBI]
GO:0008289        [VIEW IN EMBL-EBI]
GO:0009791        [VIEW IN EMBL-EBI]
GO:0009799        [VIEW IN EMBL-EBI]
GO:0009855        [VIEW IN EMBL-EBI]
GO:0009889        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010001        [VIEW IN EMBL-EBI]
GO:0010154        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010556        [VIEW IN EMBL-EBI]
GO:0010608        [VIEW IN EMBL-EBI]
GO:0012505        [VIEW IN EMBL-EBI]
GO:0014009        [VIEW IN EMBL-EBI]
GO:0014010        [VIEW IN EMBL-EBI]
GO:0014037        [VIEW IN EMBL-EBI]
GO:0015031        [VIEW IN EMBL-EBI]
GO:0015833        [VIEW IN EMBL-EBI]
GO:0015931        [VIEW IN EMBL-EBI]
GO:0016973        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0022008        [VIEW IN EMBL-EBI]
GO:0022414        [VIEW IN EMBL-EBI]
GO:0030154        [VIEW IN EMBL-EBI]
GO:0030182        [VIEW IN EMBL-EBI]
GO:0031323        [VIEW IN EMBL-EBI]
GO:0031326        [VIEW IN EMBL-EBI]
GO:0031369        [VIEW IN EMBL-EBI]
GO:0031503        [VIEW IN EMBL-EBI]
GO:0031967        [VIEW IN EMBL-EBI]
GO:0031975        [VIEW IN EMBL-EBI]
GO:0032268        [VIEW IN EMBL-EBI]
GO:0032501        [VIEW IN EMBL-EBI]
GO:0032502        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0033036        [VIEW IN EMBL-EBI]
GO:0034248        [VIEW IN EMBL-EBI]
GO:0034613        [VIEW IN EMBL-EBI]
GO:0036094        [VIEW IN EMBL-EBI]
GO:0042063        [VIEW IN EMBL-EBI]
GO:0042886        [VIEW IN EMBL-EBI]
GO:0043167        [VIEW IN EMBL-EBI]
GO:0043168        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043178        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043244        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0044614        [VIEW IN EMBL-EBI]
GO:0045184        [VIEW IN EMBL-EBI]
GO:0046907        [VIEW IN EMBL-EBI]
GO:0048316        [VIEW IN EMBL-EBI]
GO:0048468        [VIEW IN EMBL-EBI]
GO:0048608        [VIEW IN EMBL-EBI]
GO:0048666        [VIEW IN EMBL-EBI]
GO:0048699        [VIEW IN EMBL-EBI]
GO:0048731        [VIEW IN EMBL-EBI]
GO:0048856        [VIEW IN EMBL-EBI]
GO:0048869        [VIEW IN EMBL-EBI]
GO:0050657        [VIEW IN EMBL-EBI]
GO:0050658        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0051028        [VIEW IN EMBL-EBI]
GO:0051128        [VIEW IN EMBL-EBI]
GO:0051168        [VIEW IN EMBL-EBI]
GO:0051169        [VIEW IN EMBL-EBI]
GO:0051171        [VIEW IN EMBL-EBI]
GO:0051179        [VIEW IN EMBL-EBI]
GO:0051234        [VIEW IN EMBL-EBI]
GO:0051236        [VIEW IN EMBL-EBI]
GO:0051246        [VIEW IN EMBL-EBI]
GO:0051641        [VIEW IN EMBL-EBI]
GO:0051649        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0060287        [VIEW IN EMBL-EBI]
GO:0061458        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070727        [VIEW IN EMBL-EBI]
GO:0071166        [VIEW IN EMBL-EBI]
GO:0071426        [VIEW IN EMBL-EBI]
GO:0071427        [VIEW IN EMBL-EBI]
GO:0071702        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071705        [VIEW IN EMBL-EBI]
GO:0080090        [VIEW IN EMBL-EBI]
GO:2000112        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGTTGCATATGAGGAAAGGCAATATTGCTTTGGTTATAATAACACTGGTTGTTGTAGGAATTCCGGCTGCCTTGGCAGAGATTAACAGAGCTAGTTTCCCACAGGGTTTTGTCTTTGGAACTGCTTCTTCTGCATATCAGTATGAAGGCGCAGTGAAGGAGGGTGGAAGGGGACTAACTATATGGGACACATTTGCAAACTCAGGGAAAATAGATGATGGCAGTAATGCTGATGTTGCTGTGGATCACTATCACCGTTATGTTGAAGATATACAACTTATGAAAGACATGGGGATGGATGCTTATCGGTTTTCGATTGCTTGGTCTCGCATATTCCCTAATGGTTCAGGAGAAATAAACCAGGAAGGTGTGGATCATTACAATAATCTCATCAATGCATTACTTGCTCAAGGAATTGAACCATATGTTACCCTTTATCACTGGGATCTCCCTCAGGCATTGCAGGACAATTACATTGGATGGCTTGATCCTCAAATTATAAAGGACTTCACTGTTTATGCTGAGACATGCTTTGAGAAATTTGGTGACAGAGTGAAACATTGGATCACGTTTAATGAACCTCGTACTTTTGCCTTACAAGGCTATTATTCTGGACTTGACGCACCGGGGCGATGCTCATGTATGTTGTGCAATTATGCAAACGAAACAACAGAGCCTTACATAGTTGCCCACAATGTTCTGCTTTCTCATGCAGCAGTTGCAGATATCTATAGGAAAAACTACAAGGATAAACAGAACGGATTGATTGGGATATCATTGCCTGTTACATGGTATGAACCGGATACAAATGCAACAGAAGACATTGAAGCAACTCAAAGGGCCCAAGATTTTCAGCTTGGCTGCTGTGTAACTGATGCTGCTGCCTACGCTATACAAGATATTGCTTTGTTCATCATTTCTGCAGCTTTCAAAGATGGGCAGCCTATAGGAGATAGGGCAAATTCTATATGGTTATACATAGTACCAAGTGGCATGAGAAGCCTAATGCAATACATTAAGGAGAAGTATGGGAACCCTCTAGTCTTTATCACAGAAAATGGTATGGATGACCCAAATGACTCATCTATCCCAATTGAAGAAGCTCTCAAGGATGAGAAAAGAATCAAATACTATAATGATTACTTAACTAACCTGTTAGCTGCTATTGTAATCATGAGTTTTGTTGTGGCTAATGCAGGGAAGATGGTTGCAATGTTAAAGGGTATTTTGCTTGGTCTCTGCTGGATAATTGGGAATGGGAATCAGGGGTTTTCAATTAAGGAATTCCCAAAATCAGTAGTTATAATTTTCACAATGGGAGCCGTTAAGTTGGAAATTCGTTGCCCTCGAAACCTTAATGGAATCGGTATTGAACCTGACCCGGATTGGAGTTTCGACGCTTTGTTATCGGAGCTTGATTCCTTGGAAAAGAAGCTTAATAATGTTTCTTCTTCTGTTCCTCTGCCTTTTACAAAAATCAAACCAAGAGAAATTTATGGGGAAAAAGGCGTCAAGAGGAGCCCGAATGCATTGGTAATGAAAATATCTGATGAGGATAGTGAAAGCGAGGCTGAGGAGGTTAATGATCGAGCGTTGGTGAAAGCTGCACAGTTTAAATGCGATGAATTTTATTTGAGGTACGGAATTATACTTGCCCTTTTGTTCAATTTTGTTAAATGTGGAAAATTTTTATCTGAATGTATGGTCAAGGAGCTTATTTTTAACGTTTCGATTGTAAAAATGTTAACTTTCAGTGGGAGCGATGATGATTCTGAGTCTGACAATGAATGGTGTCTTGAAGCCCAAACATCCTTGATGGATGAGGCAGGATTGCATCAAGTTGGGGTTAAGGAGGAGATTAGAGACAGAATCTCAGCATTAGAGACCGATTTGATGAATGAGACCGAAAAGTCTTGCTCTGCACAAGCTAAAGTTGAAAAATATAGAGAAGCAAGGCTGGAAGTAGAGAGGAAGATTGATGTTGAGTATCAACGCAGAATTGCACAAGGACTCGATAATTACCTGACTGCCATTCAGAGGGACCATGAGCTTGAATCACAAATAGAGGAAAGGAGAATAACAAGTGACTCAGCACATGAAGAAAAGGCCAAAGTAGAAGCAGAGGCTAAGCCTAAACTCATAATGGCTGCAGAGAGTGGTTTAAAGCAAGAGAGGGAAAGATTAGAAAAGTTAAAAGAGTGGGATATTGAAATTAGAAACCAATTATCAGTGAGATATTCAAGTTCAAATGTGGATTTTGGAAGCACTGAGAGGCATATTGGTAGGTTGATAAGACAAATAAGGGGTACAAGAGACAATGTCAGAAGAAAAGCTAGTGAGCTTATAAATATTTTCAACAATCCTCAATATTGTCCTCAAGCCATTAGCATTGGGTATTTTGCCAAGAAGGTTGTTTCTCACTGTGAAAGCCCTGATAATGCTGCCTTTGCTTGTGGTTATGTCATTGTCCTTGTAACATCTCAATTCCCACAGGCAATGGATCTTGTTGTTGCTCAACTACAAAGAGCTTGCATATACATTGTCCCGAAGCATATATCATACTCAAACTCATCAGCATTTGAATCCAGAGAGGCTTACTTGAAGGCTATTGGATACCAAGAAGATCAAGATGGCAAAATTGAAAGTAGCAAGGATTATTTGAAACGGTTGGAATCTTATATGAAATTATATGGGGCACTGGTTCAGACTGAGGTTCCTGGTTGCCCAAATTTTCATGGTCTTGAGCAAGGATGGGCATGGCTTGCTAGGTTCCTAAATGCACTCCCTGCCAATATATATACTGCTGTGGCTTTGAATGCATTCCTGCAAATGGCTGGCTTTGCTCTCTTCACAAATTACAAATCTCAGTTCATCAAGTTGCTCAACATCGTCTCCGGTAACTTTCTAAATGCGTTGAGAGCACAAGAAGATCCAGAGCTGAGGCCCATTATGGCTGAGATTCAGGCTTACTTGGAAGATAAGAAATTCCTTCAACAACCAGAGGGAAGGACTTTGCAAGCTTATTTGTTATCAACCAGATAG
Protein:  
MLHMRKGNIALVIITLVVVGIPAALAEINRASFPQGFVFGTASSAYQYEGAVKEGGRGLTIWDTFANSGKIDDGSNADVAVDHYHRYVEDIQLMKDMGMDAYRFSIAWSRIFPNGSGEINQEGVDHYNNLINALLAQGIEPYVTLYHWDLPQALQDNYIGWLDPQIIKDFTVYAETCFEKFGDRVKHWITFNEPRTFALQGYYSGLDAPGRCSCMLCNYANETTEPYIVAHNVLLSHAAVADIYRKNYKDKQNGLIGISLPVTWYEPDTNATEDIEATQRAQDFQLGCCVTDAAAYAIQDIALFIISAAFKDGQPIGDRANSIWLYIVPSGMRSLMQYIKEKYGNPLVFITENGMDDPNDSSIPIEEALKDEKRIKYYNDYLTNLLAAIVIMSFVVANAGKMVAMLKGILLGLCWIIGNGNQGFSIKEFPKSVVIIFTMGAVKLEIRCPRNLNGIGIEPDPDWSFDALLSELDSLEKKLNNVSSSVPLPFTKIKPREIYGEKGVKRSPNALVMKISDEDSESEAEEVNDRALVKAAQFKCDEFYLRYGIILALLFNFVKCGKFLSECMVKELIFNVSIVKMLTFSGSDDDSESDNEWCLEAQTSLMDEAGLHQVGVKEEIRDRISALETDLMNETEKSCSAQAKVEKYREARLEVERKIDVEYQRRIAQGLDNYLTAIQRDHELESQIEERRITSDSAHEEKAKVEAEAKPKLIMAAESGLKQERERLEKLKEWDIEIRNQLSVRYSSSNVDFGSTERHIGRLIRQIRGTRDNVRRKASELINIFNNPQYCPQAISIGYFAKKVVSHCESPDNAAFACGYVIVLVTSQFPQAMDLVVAQLQRACIYIVPKHISYSNSSAFESREAYLKAIGYQEDQDGKIESSKDYLKRLESYMKLYGALVQTEVPGCPNFHGLEQGWAWLARFLNALPANIYTAVALNAFLQMAGFALFTNYKSQFIKLLNIVSGNFLNALRAQEDPELRPIMAEIQAYLEDKKFLQQPEGRTLQAYLLSTR